Category: ANY Reconstruct ancestor(s) Correlate character states Correlate character rates Correlate character state(s) with character rate(s) Simulate states Tree-only diversification/coalescence methods Tree+Data diversification/coalescence methods Tree-tree correlation Display tree Make tree proportional to time Parameter estimation or model selection for character model Adjust for tree uncertainty ?
Question: ANY (Select category first)
Criterion: ANY Parsimony Likelihood Bayesian Least squares ?
Character type(s): ?

1. ANY DNA strict DNA broad RNA strict RNA broad AA strict AA broad Binary Multistate unordered Multistate ordered Continuous unbounded Continuous nonnegative Continuous positive Continuous bounded Frequency/proportion Continuous 1D range Continuous 1D distribution Continuous multidimensional range None (first/single character)
2. ANY DNA strict DNA broad RNA strict RNA broad AA strict AA broad Binary Multistate unordered Multistate ordered Continuous unbounded Continuous nonnegative Continuous positive Continuous bounded Frequency/proportion Continuous 1D range Continuous 1D distribution Continuous multidimensional range None (second of a pair of characters)
3. ANY DNA strict DNA broad RNA strict RNA broad AA strict AA broad Binary Multistate unordered Multistate ordered Continuous unbounded Continuous nonnegative Continuous positive Continuous bounded Frequency/proportion Continuous 1D range Continuous 1D distribution Continuous multidimensional range None

Branch length type: ANY Unknown Equal Grafen Time-proportional Time-calibrated Discrete-char parsimony Discrete-char likelihood Discrete-char Bayesian Discrete-char distance Continuous-char parsimony Continuous-char likelihood Continuous-char Bayesian Continuous-char distance ?
Tree type: ANY Rooted, binary, complete tree Rooted, binary, incomplete tree Unrooted, binary, complete tree Unrooted, binary, incomplete tree Rooted, polytomies, complete tree Rooted, polytomies, incomplete tree Unrooted, polytomies, complete tree Unrooted, polytomies, incomplete tree Galled tree General network, unknown branch widths General network, known branch widths ?

Methods